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Technology Development Initiative – Paper of the Month – March 2023

A figure from this study

Single-Cell Chromatin Modification Profiling Reveals Increased Epigenetic Variations with Aging

Published in Cell.

Authors

Peggie Cheung, Francesco Vallania, Hayley C Warsinske,  Michele Donato, Steven Schaffert, Sarah E Chang, Mai Dvorak, Cornelia L Dekker, Mark M Davis, Paul J Utz, Purvesh Khatri, and Alex J Kuo

Paper presented by Dr. Atul Daiwile and selected by the NIDA TDI Paper of the Month Committee

Publication Brief Description

Post-translational modifications of histone proteins are central to the regulation of nearly all DNA-based biological processes. However, the degree and variability of chromatin modifications in specific human cells remain largely unknown. A group of researchers from Stanford University employed a multiplexed mass cytometry to profile the epigenetic landscape and measure a broad array of global chromatin modifications in human cells at the single-cell level. Their data revealed a marked difference in cell type and hematopoietic-lineage-specific chromatin modification patterns. Using the “EpiTOF” method they observed an age-related increase in the heterogeneity between individuals and elevated cell-to-cell variability in chromatin modifications Moreover, they discovered that aging-related chromatin alterations are predominantly driven by non-heritable influences. The EpiTOF technology provides new opportunities for identifying cell-specific epigenetic changes associated with altered physiological and pathological states.


Cheung, Peggie; Vallania, Francesco; Warsinske, Hayley C; Donato, Michele; Schaffert, Steven; Chang, Sarah E; Dvorak, Mai; Dekker, Cornelia L; Davis, Mark M; Utz, Paul J; Khatri, Purvesh; Kuo, Alex J

Single-Cell Chromatin Modification Profiling Reveals Increased Epigenetic Variations with Aging Journal Article

In: Cell, vol. 173, no. 6, pp. 1385–1397.e14, 2018, ISSN: 1097-4172.

Abstract | Links

@article{pmid29706550,
title = {Single-Cell Chromatin Modification Profiling Reveals Increased Epigenetic Variations with Aging},
author = {Peggie Cheung and Francesco Vallania and Hayley C Warsinske and Michele Donato and Steven Schaffert and Sarah E Chang and Mai Dvorak and Cornelia L Dekker and Mark M Davis and Paul J Utz and Purvesh Khatri and Alex J Kuo},
url = {https://pubmed.ncbi.nlm.nih.gov/29706550/},
doi = {10.1016/j.cell.2018.03.079},
issn = {1097-4172},
year = {2018},
date = {2018-05-01},
urldate = {2018-05-01},
journal = {Cell},
volume = {173},
number = {6},
pages = {1385--1397.e14},
abstract = {Post-translational modifications of histone proteins and exchanges of histone variants of chromatin are central to the regulation of nearly all DNA-templated biological processes. However, the degree and variability of chromatin modifications in specific human immune cells remain largely unknown. Here, we employ a highly multiplexed mass cytometry analysis to profile the global levels of a broad array of chromatin modifications in primary human immune cells at the single-cell level. Our data reveal markedly different cell-type- and hematopoietic-lineage-specific chromatin modification patterns. Differential analysis between younger and older adults shows that aging is associated with increased heterogeneity between individuals and elevated cell-to-cell variability in chromatin modifications. Analysis of a twin cohort unveils heritability of chromatin modifications and demonstrates that aging-related chromatin alterations are predominantly driven by non-heritable influences. Together, we present a powerful platform for chromatin and immunology research. Our discoveries highlight the profound impacts of aging on chromatin modifications.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}

Close

Post-translational modifications of histone proteins and exchanges of histone variants of chromatin are central to the regulation of nearly all DNA-templated biological processes. However, the degree and variability of chromatin modifications in specific human immune cells remain largely unknown. Here, we employ a highly multiplexed mass cytometry analysis to profile the global levels of a broad array of chromatin modifications in primary human immune cells at the single-cell level. Our data reveal markedly different cell-type- and hematopoietic-lineage-specific chromatin modification patterns. Differential analysis between younger and older adults shows that aging is associated with increased heterogeneity between individuals and elevated cell-to-cell variability in chromatin modifications. Analysis of a twin cohort unveils heritability of chromatin modifications and demonstrates that aging-related chromatin alterations are predominantly driven by non-heritable influences. Together, we present a powerful platform for chromatin and immunology research. Our discoveries highlight the profound impacts of aging on chromatin modifications.

Close

  • https://pubmed.ncbi.nlm.nih.gov/29706550/
  • doi:10.1016/j.cell.2018.03.079

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